Prediction of protein-protein interactions

1. Predicting whether two proteins interact or not given their amino acid sequences

PSOPIA-e.jpg

  • Go to the PSOPIA site.
2. Predicting protein-binding sites given a single amino acid sequence

PSIVER-e.jpg

  • Go to the PSIVER site.
3. Predicting protein-binding sites given a pair of amino acid sequences
  • Go to the PPiPP site.

Software ＆ Database

Publications

2015

  1. 水口賢司 2015 タンパク質間相互作用「生命ネットワークの基本部品の構造を解明する」 日本生物物理学会

2014

  1. Murakami, Y., & Mizuguchi, K. 2014 Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators. BMC Bioinformatics 15, 213 doi

2011

  1. Ahmad, S., & Mizuguchi, K. 2011 Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data. PLOS ONE 6(12), e29104 doi

2010

  1. Murakami, Y., & Mizuguchi, K. 2010 Applying the Naïve Bayes classifier with kernel density estimation to the prediction of protein–protein interaction sites. Bioinformatics 26(15), 1841–1848 doi

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